Evolution under our noses

NEW YORK – To study evolution, Jason Munshi-South has tracked elephants in central Africa and proboscis monkeys in the wilds of Borneo. But for his most recent expedition, he took the A train.  

Munshi-South and two graduate students, Paolo Cocco and Stephen Harris, climbed out of the 168th Street station lugging backpacks and a plastic crate full of scales, zip-close bags, clipboards, rulers and tarps. They walked east to the entrance of Highbridge Park, where they met Ellen Pehek, a senior ecologist in the New York City Parks and Recreation Department. The four researchers entered the park, made their way past a basketball game and turned off the paved path into a ravine. The scientists walked north before plunging back into the forest to reach their field site.  

Munshi-South, an assistant professor at Baruch College, has joined the ranks of a small but growing number of field biologists who study urban evolution – not the rise and fall of skyscrapers and neighbourhoods, but the biological changes that cities bring to the wildlife that inhabits them. For these scientists, the New York metropolitan region is one great laboratory.  

White-footed mice, stranded on isolated urban islands, are evolving to adapt to urban stress. Fish in the Hudson have evolved to cope with poisons in the water. Native ants find refuge in the median strips on Broadway. And more familiar urban organisms – like bedbugs, rats and bacteria – also mutate and change in response to the pressures of the metropolis. In short, the process of evolution is responding to New York and other cities the way it has responded to countless environmental changes over the past few billion years. Life adapts.  

The mice are the object of Munshi-South’s attention. Since 2008, he and his colleagues have fanned out across the city to study how the rise of New York influenced the evolution of the deer mice.  

On this day in Highbridge Park, his students, Cocco and Harris, spread a blue tarp on the forest floor, while Munshi-South walked to an orange flag planted in the ground. He picked up an aluminium box sitting next to the flag and pushed in a door at one end. At the other end of the box crouched a white-footed mouse. It gazed back at Munshi-South with bulging black eyes.  

The researchers inspected 50 traps laid the day before and found seven mice inside. They plopped each mouse out of its trap and into a bag. They clipped a scale to each bag to weigh the mice. Munshi-South gently took hold of the animals so his students could measure them with a ruler along their backs.  

Munshi-South and his colleagues have been analysing the DNA of the mice. He’s been surprised to find that the populations of mice in each park are genetically distinct from the mice in others.  

“The amount of differences you see among populations of mice in the same borough is similar to what you’d see across the whole southeastern United States,” he said.  

White-footed mice live today in forests from Canada to Mexico. They arrived in the New York City region after ice age glaciers retreated 12,000 years ago. In the past few centuries, as their forest home became a city, they survived in New York’s patches of woods. (House mice, which New Yorkers battle in their apartments, arrived with European settlers.) Research by Munshi-South and his colleagues suggests that New York’s white-footed mice, which occupy isolated patches, are adapting to life in the city.  

When Munshi-South opened the final trap, the seventh mouse had run out of patience. It shot out of its box and raced off into the brush.  

Cocco shrugged. “They are New Yorkers, after all,” he said.  



Evolution is one of life’s constants. New species emerge; old ones become extinct. Environmental changes have often steered evolution in new directions. And modern cities like New York have brought particularly swift changes to the environment. European settlers cut down most of New York’s original forest; towns grew and then merged into a sprawling metropolitan region. The chemical environment changed as well, as factories dumped chemical pollution into the water and soil.  

Pollution has driven some of the starkest examples of evolution around New York. Hudson River fish faced a dangerous threat from PCBs, which General Electric released from 1947 to 1977. PCBs cause deformities in fish larvae.  

“These are important changes,” said Isaac I. Wirgin of New York University Medical Center. “If you’re missing your jaw, you’re not going to be able to eat.”  

Wirgin and his colleagues were intrigued to discover that the Hudson’s population of tomcod, a bottom-dwelling fish, turned out to be resistant to PCBs.  

In March, he and his colleagues reported that almost all the tomcod in the Hudson share the same mutation in a gene called AHR2. PCBs must first bind to the protein encoded by AHR2 to cause damage. The Hudson River mutation makes it difficult for PCBs to grab onto the receptor, shielding the fish from the chemical’s harm.  

The AHR2 mutation is entirely missing from tomcod that live in northern New England and Canada. A small percentage of tomcod in Long Island and Connecticut carry the mutation. Wirgin and his colleagues concluded that once PCBs entered the Hudson, the mutant gene spread quickly.  

“When these chemicals first starting getting released, if you had the normal form of the gene, you probably weren’t going to make it,” Wirgin said.  

Today, scientists can scan the entire genomes of New York’s animals and plants to look for evolutionary changes. In June, Harris presented new data on white-footed mice at the annual meeting of the Society for the Study of Evolution. Harris and his colleagues have identified mutations in more than 1,000 genes that are present in all New York City mice, but missing from mice in Harriman State Park, 72 kilometres north of the city.  

The scientists are investigating whether these mutations have helped the mice adapt to life in New York City. Clues that some of them do are found in the functions of the mutated genes. Many of the genes are involved in fighting bacteria, while others are for reproduction and still others for coping with stress from exposure to chemicals. It’s possible that these new mutations are spreading independently in each of the parks in the city.  

Cities attract only a small fraction of evolutionary biologists, who often work in lusher places like the Amazon. But urban evolution is attracting more research these days, because cities are fast-growing, and the urban environment is quickly taking over large areas of the Earth’s surface.  



On a recent afternoon, James Danoff-Burg and Rob Dunn were clambering around in a narrow Broadway median on the Upper West Side. Danoff-Burg, a biologist at Columbia University, was digging up plastic cups from the ivy. Dunn, a biologist from North Carolina State University, was 1.5 meters in the air, crouched on a bough of a Japanese maple.  

“New one! New one!” Dunn shouted over the traffic.  

He and Danoff-Burg were surveying the median for species of ants. Dunn had spotted Crematogaster lineolata, an ant species that he and Danoff-Burg had never found before in this particular urban habitat.  

From his backpack, Dunn pulled out an aspirator, a rubber tube connected to a glass jar. Holding one end of the tube over the ant, he sucked it in. Instead of going into his mouth, the insect tumbled into the jar.  

Danoff-Burg, Dunn and their colleagues chose to study the medians of Broadway to see how human activity alters biodiversity. In this artificial city, there is no environment more artificial than these medians, which sit on fill that was poured on top of subway tunnels. The scientists have found a blend of ant species, some that have been here since before the city existed, and others that have arrived more recently, hitching rides on ships, planes and trucks. The most common ant Danoff-Burg and Dunn encounter is the pavement ant (Tetramorium caespitum), which came from somewhere in Europe.  

Biologists find a mixture of native and nonnative in all the life forms they study in New York, from the trees in Central Park to the birds of Jamaica Bay. The biodiversity of New York today is the result of extinctions, invasions and adaptations.  

Danoff-Burg and Dunn are trying to figure out what controls the balance of native and new species in New York. They don’t understand why some medians have more biodiversity than others, for example. On natural islands, biodiversity tends to increase with the size of the islands. Danoff-Burg and Dunn find no such correlation in the medians on Broadway. They also have to determine how native species of ants are coexisting in such close quarters with invasive species.  

New York, in other words, is an evolutionary experiment – one that some scientists find fascinating to observe.  

“It’s some new thing emerging around us,” Dunn said.  

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